Engimal v3
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They’ll separate them I would imagine - Port’s move is just signally a clear intent to leave the SANFL.
The league will run a clean AFL and AFL-R (19 clubs) with a state tier ‘VFA’ (or whatever you want to call it) that will be Victoria’s equivalent to the WAFL and SANFL containing the likes of Coburg, Williamstown, Box Hill etc
Existing alignments will be wrapped up and the expectation will be to run your own reserves side.
Don’t stress, they’ll give the poor clubs the money they need to make this work.
You'd need to promote a bunch of local clubs to fill the VFL after the AFL-aligned clubs leave. I hope not, but the simple solution would seem to tell the remaining VFL clubs that they need to go find a local league to play in.